Postdoctoral position in Single-Cell RNA-seq Analysis and Data Visualization
We are looking for a candidate with proficiency and documented laboratory research experience in bioinformatics analysis. The candidate will lead single cell genomics pipelines and will be responsible for the development, enhancement and maintenance of the scRNAseq program of the lab
We work at the intersection of immunology and developmental biology.
Our primary goal is to understand how immune responses impact the development, integrity and function of mucosal tissue layers, such as the intestinal epithelium, during homeostasis and upon different types of stress, including infections.
To study these questions we exploit the advantages of the zebrafish model such as ex utero and rapid development, transparency, large progeny, and simple genetic manipulation. We combine live imaging, flow cytometry, single-cell transcriptomics, and models inducing mucosal stress, including pathogenic challenges.
Our research can be subdivided into three main topics:
1) Protection of intestinal epithelial integrity since early development: Epithelial cells are at the core of intestinal organ function. They are in charge of absorbing nutrients and water, and at the same time constitute a barrier for potential pathogens and harmful molecules. Epithelial cells perform all these functions before full development of the immune system, which promotes epithelial barrier function upon injury. We study how robust epithelial integrity is achieved prior and after maturation of the intestinal immune system, with a focus on the function of mucosal cytokines.
2) Epithelial-leukocyte crosstalk throughout development: Intestines become vastly populated by leukocytes after exposure to external cues from diet and colonization by the microbiota. We have recently reported the existence and diversity of zebrafish innate lymphoid cells (ILCs), a key component of the mucosal immune system recently discovered in mice and humans. ILCs mediate immune responses by secreting cytokines such as IL-22 which safeguards gut epithelial integrity. We are investigating the development and function of this lymphocyte family, as well as other leukocyte lineages residing at the intestines, with a special interest in their crosstalk with epithelial cells during homeostasis and inflammation.
3) Evolution of intestinal cellular circuits and disease modelling: We perform a systematic comparison between zebrafish, mouse and human intestinal cellular composition, focusing on cytokine networks activated during different types of inflammation. With this we aim to: i) understand the evolution of intestinal cellular circuits supporting the stability of the epithelial layer upon diverse perturbations, and ii) identify and exploit the similarities between human and zebrafish to model and study intestinal pathologies
